NDKmol - molecular viewer Apk
Latest version 0.97
25 Mar 2018
Apk Infos
| Version | 0.97 |
| Rating | 3.6/5, based on 267 votes |
| Size | 672 KB |
| Requires Android | Android 2.2+ (Froyo) |
| Author's Notes | Fast molecular viewer that supports proteins, nucleic acids and small molecules. |
About NDKmol - molecular viewer APK
Table Of Contents
Description
NDKmol -- Molecular Viewer for Android== About ==
NDKmol is a molecular viewer for Android. You can view three dimensional structures of proteins, nucleic acids and small molecules. NDKmol supports most of common representations for molecules, such as ribbon, trace, stick, sphere and line. NDKmol also supports symmetry operations; biological assemblies and crystal packing can be displayed. You can search and download structures from RCSB PDB and NCBI Pubchem.
NDKmol has almost same functionality as GLmol, which is written in
WebGL/Javascript and runs on Web browsers. You can try GLmol at http://webglmol.sourceforge.jp/index-en.html
== Features ==
* Read PDB or SDF/MOL file
* Rotate/Translate/Zoom model by finger
* Representations
- Line
- Stick
- Sphere(van der Waals radius)
- Alpha carbon trace
- Ribbon (Thin or Thick)
- Strand
- B factor tube
- Nucleic acid ladder
- Nucleic acid line
- solvent 'stars'
* Smoothing of beta-sheets
* Coloring
- By chain
- By secondary structure(when defined in SHEET/HELIX records)
- By Elements
- Gradation (a.k.a chainbow)
- B factor
- polar/nonpolar
* Crystallography
- Display unit cell
- Show crystal packing (when defined in REMARK section)
- Display biological assembly (when defined in REMARK section)
== How to Use ==
When launched, NDKmol automatically loads Porin (PDBID: 2POR) as an example. You can rotate the molecule by your finger.
To zoom or translate the molecule, press MENU button in your phone/tablet and select the mode. Two-finger gestures are also supported.
Everything else can be done from the MENU.
To load other PDB files, please put the file in "PDB" directory of the SD card and select "Open" command in the MENU. You can also download structures directly from RCSB PDB and NCBI PubChem web server. Select "Search and Download" in the menu.
== Contact ==
Project website is located at http://webglmol.sourceforge.jp/ . You can get source codes for this program from here.
Comments and suggestions are welcome at http://sourceforge.jp/projects/webglmol/forums/ or biochem_fan@users.sourceforge.jp
=== LICENSE notice ===
NDKmol itself is licensed under GNU Lesser General Public License as follows.
However, PDB files included as examples are under DIFFERENT conditions.
Please consult
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/pdb_advisory.html
-------------
NDKmol - Molecular Viewer for Android
(C) Copyright 2011, biochem_fan
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with this program. If not, see .
Latest updates
What's new in version 0.97
Fixed PDB download from RCSB PDBHow to install NDKmol - molecular viewer APK on Android phone or tablet?
Download NDKmol - molecular viewer APK file from ApkClean, then follow these steps:
Update Phone Settings
- Go to your phone Settings page
- Tap Security or Applications (varies with device)
- Check the Unknown Sources box
- Confirm with OK
Go to Downloads
- Open Downloads on your device by going to My Files or Files
- Tap the APK file you downloaded (jp.sfjp.webglmol.NDKmol-v0.97-ApkClean.apk)
- Tap Install when prompted, the APK file you downloaded will be installed on your device.
Older Versions
| 0.97 (20) | 672 KB |
Questions & Answers
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User's Reivew
5 ★Love it, helps so much in undergrad biochemistry class.
5 ★excellent !
5 ★Nice
1 ★When I open the app I only see what I think is the initial splash screen molecule? No menu is visible or accessible from any point on the screen. The molecule looks wonderful and is fully interactive and easily controlled which makes me very sad that I can't use this app.
4 ★I love that NDKmol recognises ligands and draws them in a different representation to the protein. The feature I would like to see most now is trajectories (e.g. when frames in a PDB are separated by END cards). More multi-touch support would also be nice: 2 finger drag to move (similar to how you change pitch in google earth), and 2finger rotate to allow rotations in the axis perpendicular to the screen. I can see myself using this app in meetings with my supervisor.
5 ★This app is fantastic. Smooth and renders beautifully. Would love it if you could include stereo views as well.
5 ★Was waiting for pymol to come to android, but this looks just as great, and the touch features make navigation very intuitive. The thick ribbons work just fine on my Galaxy S II and Transformer Infinity. Please make an optimized tablet version, I'd also love to be able to search and center on specific residues and active sites. I wonder how much trouble it would be to add a ray trace rendering function? ;)
3 ★I guess my problem stems from not knowing how to use it, or the program not being designed for what I need. I need to view .mol files - for Phthalocyanines, Porphyrins, POMs, etc. I want it that even if my computer is screwed up, I can function and look at a molecule... help?
5 ★This app is so fluid and responsive and loaded with lots of cool features that i could not resist myself from giving it 5 stars
5 ★Its too good.. Thanks.. Please add stereo feature too..
4 ★Great job, thank you.
5 ★It would be nice to have the display molecule in full screen. Also does not display nucleic acids properly.
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